标签云

Alignment Allele-specific transcription Alternative Splicing Barcoding Bisulfite Sequencing Cancer biology ChIP-exo ChIP-on-chip ChIP-Seq Clone verification Comparative genomics Comparative transcriptomics Comparison Conversion Copy number estimation De novo assembly De novo sequencing De-novo assembly DNA methylation DNA-Seq Epigenomics Evaluation and validation Exome and whole genome variant detection Framework Functional Genomics Gene expression Gene regulatory network analysis General bioinformatics (pipeline) Genomic Assembly Genomic Assembly Evaluation Genomic Assembly Validation Genomics Identification InDel discovery Infrastructure Mapping Mass Accuracy Metagenomics Metatranscriptomics Next Generation Sequencing Nucleic acid sequence analysis Nucleic acid structure comparison Pairwise structure alignment Peptide identification (DB) Peptide identification (De novo) Peptide identification (lib match) Personal genomics Phylogenetics Population genetics Population Genomics Protein Inference Quality Control Quantitation Raw Data Raw Data / Conversion Read alignment Reference assembly Regulatory genomics Regulatory genomics epigenomics Resequencing Results processing RNA structure prediction RNA-Seq RNA-Seq Alignment RNA-Seq Quantitation Search and retrieval Sequence analysis Sequence database search Sequence functional annotation Sequence motif discovery Sequence motif recognition Sequence Quality Control Sequencing Small RNA transcriptome SNP Annotation SNP discovery SNPs Somatic mutations Structural variation Targeted assembly Targeted resequencing Transcription Factor Binding Site identification Transcriptome Viral genomics Whole gene prediction Whole Genome Resequencing Whole Genome Resequencing Analysis  Alignment  Alternative Splicing  Bisulfite Sequencing  ChIP-on-chip  ChIP-Seq  De novo assembly  De novo transcriptome assembly  De-novo assembly  DNA methylation  DNA-Seq  Exome and Whole genome variant detection  Fusion finding  Fusion genes  Fusion transcripts  Genomic Assembly  Genomics  Genotyping  High-throughput sequencing  In vitro selection  InDel discovery  Mapping  Metagenomics  MiRNA  MiRNA-Seq  Motif analysis  Next Generation Sequencing  Personal genomics  Phylogenetics  Population genetics  Population genomics  Read alignment  Reference assembly  Regulatory genomics  RNA Seq analysis  RNA-Seq  RNA-Seq Quantitation  Sequence analysis  Sequence annotation  Sequencing  Small RNA transcriptome  SNP discovery  Structural variation  Targeted resequencing  Transcription Factor Binding Site identification  Transcriptomics  Whole Genome Resequencing  Whole Genome Resequencing Analysis 基因组注释 基因预测 多重序列比对 多重比对 序列拼接 推荐 比较基因组 重复序列
561. GenomeTools
The GenomeTools genome analysis system is a free collection of bioinformatics tools for genome informatics.1.3.6
标签:Genomics
562. GenoMiner
A proprietary NGS analysis solution. Powerful hardware comes with preinstalled software, organized in workflows.
标签:Reference assembly, De-novo assembly, ChIP-Seq, RNA-Seq
563. GenoViewer
A feature rich NGS assembly viewer/browser.
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564. GensearchNGS
A user friendly framework for re-sequencing in a diagnostics context: searching for mutations/variants, especially on well known genes.
标签:Targeted resequencing
565. GenVision
GenVision is a genomic visualization software package that is fully integrated with Lasergene and is designed to support easy generation of publication quality graphics and maps.
标签:Genomics
566. GigaBayes
A short-read SNP and short-INDEL discovery program.
标签:Genomics, SNP discovery
567. Goby framework
Goby is a next-gen data management framework designed to facilitate the implementation of efficient next-gen data analysis pipelines.
标签:RNA-Seq
568. Golden Helix
Golden Helix is a bioinformatic software provider and analytic service provider. The core of its business is about empowering scientists to discover more, discover it easier, and to come away with valid and reproducible bioinformatics results. The software, SNP & Variation Suite, is a s...
标签:Epigenomics, Genomics, DNA-Seq, SNP discovery, Whole Genome Resequencing Analysis,Copy number estimation,Quality Control
569. Goseq
An R package to detect Gene Ontology (GO) categories and other categories of genes (such as KEGG pathways) that are over/under represented in an RNA-seq data.
标签:RNA-Seq Quantitation
570. HeliSphere
Open-source LINUX software package intended for use in analyzing data produced by the HeliScope Single Molecule Sequencer.
标签:Genomics, Whole Genome Resequencing, RNA-Seq, SNP discovery
571. HINT
HMM-based Identification of TF Footprints
标签:Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification
572. HTSeq
Python framework to process and analyse high-throughput sequencing (HTS) data
标签:
573. IDBA
IDBA (Iterative De Bruijn graph short read Assembler) is a short read assembler based on iterative De Bruijn graph. It is developed under 64-bit Linux, but should be suitable for all unix-like system
标签:De-novo assembly
574. Illuminate
Analytics toolkit in Python for Illumina HiSeq and MiSeq metrics
标签:Genomics
575. IMAGE
“Iterative Mapping and Assembly for Gap Elimination”. IMAGE closes gaps in a draft assembly using Illumina paired-end reads.
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576. Inchworm
Employs the Kmer graph method to reconstruct (in many cases full-length) transcripts from Illumina RNA-Seq (preferrably strand-specific) reads.
标签:RNA-Seq, De novo transcriptome assembly
577. Integrated Genome Browser
Visualization software for next-generation genomics
标签:Genomics
578. IOmics
iOmics is a cloud based workflow analysis framework for managing, analyzing and visualizing NGS data.
标签:Genomics, Transcriptomics,Epigenomics, RNA-Seq, Exome and Whole genome variant detection
579. IQSeq
Integrated Isoform Quantification Analysis based on A Partial Sampling Framework
标签:RNA-Seq Quantitation,Alternative Splicing
580. ISAAC
ISAAC comprises of genome aligner and variant caller, by Illumina.
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